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Bioedit Company clustal w alignment function
Clustal W Alignment Function, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clustal+w+function/clustalw+function/pmc12097280-121-21-26
Average 90 stars, based on 1 article reviews
clustal w alignment function - by Bioz Stars, 2026-10
90/100 stars

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Article Title: Distribution of benthic phototrophs, sulfate reducers, and methanogens in two adjacent saltern evaporation ponds in Eilat, Israel
Article Snippet: Obtained sequences were aligned with related sequences from the National Center for Biotechnology Information (NCBI) database in Bioedit using the CLUSTAL W function.

Article Title: Community Analysis of a Mercury Hot Spring Supports Occurrence of Domain-Specific Forms of Mercuric Reductase
Article Snippet: Gene and protein sequence alignments were prepared using the CLUSTAL W (37) function included in BIOEDIT, version 5.0.9.

Article Title: Community Analysis of a Mercury Hot Spring Supports Occurrence of Domain-Specific Forms of Mercuric Reductase
Article Snippet: Gene and protein sequence alignments were prepared using the CLUSTAL W ( 37 ) function included in BIOEDIT, version 5.0.9.

Sequencing:

Article Title: The complete mitochondrial genome of the bait worm, Marphysa victori (Annelida; Polychaeta; Eunicida; Eunicidae).
Article Snippet: .. A nucleotide sequence matrix including the complete mitogenome sequences of 12 polychaete species retrieved from GenBank (http://www.ncbi.nlm.nih.gov/) and that of M. victori in this study were aligned using the Clustal W function in BioEdit 7.2.5 (7) to determine the gene boundaries of protein-coding genes (PCGs) and ribosomal RNA genes. ..

Article Title: The complete mitochondrial genome of the bait worm, Marphysa victori (Annelida; Polychaeta; Eunicida; Eunicidae)
Article Snippet: .. A nucleotide sequence matrix including the complete mitogenome sequences of 12 polychaete species retrieved from GenBank ( http://www.ncbi.nlm.nih.gov/ ) and that of M. victori in this study were aligned using the Clustal W function in BioEdit 7.2.5 ( ) to determine the gene boundaries of protein-coding genes (PCGs) and ribosomal RNA genes. ..

Article Title: Isolates of Piscirickettsia salmonis from Scotland and Ireland Show Evidence of Clonal Diversity
Article Snippet: .. DNA sequences were aligned with the CLUSTAL W function (23) in the BioEdit sequence editor package (11). .. Cladograms were constructed from the sequence alignments by using programs available in PHYLIP (Phylogeny Inference Package 3.5c), through the Pasteur Institute web interface (http://bioweb.pasteur.fr).

Construct:

Article Title: Phylogenetic Affinities of Auriculostoma (Digenea: Allocreadiidae), with Descriptions of Two New Species From Peru
Article Snippet: Two new allocreadiid trematodes are described from the intestine of characid fishes from Rio Itaya, a tributary of the Amazon River near Iquitos, Peru.. Auriculostoma foliaceum n. sp. is described from Bryconops cf. caudomaculatus (Günther, 1864) Backup, 2003, and Auriculostoma diagonale n. sp. from Stethaprion cf. erythrops Cope, 1870.. Auriculostoma foliaceum n. sp. differs from its congeners by having a foliated lateral margin and lacking vitelline follicles in the forebody.



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The feature of selected VNARs ( a ) The characterization of selected clone from each pool. n.d. = not detected. ( b ) VNAR amino acid sequence of selected clone. Complementarity determining region 1 (CDR1), Hyper variable region 2 (HV2), HV4 and CDR3 are expressed under the sequences. The sequences were expressed by using BioEdit version 7.2.5. Cysteine residues are highlighted in yellow. Positively charged amino acids, negatively charged amino acids, and hydrophobic amino acids in CDR3 are shown in red, green, and blue, respectively. ( c ) Sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) of the selected clones under non-reducing condition. M: Protein Marker.
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The feature of selected VNARs ( a ) The characterization of selected clone from each pool. n.d. = not detected. ( b ) VNAR amino acid sequence of selected clone. Complementarity determining region 1 (CDR1), Hyper variable region 2 (HV2), HV4 and CDR3 are expressed under the sequences. The sequences were expressed by using BioEdit version 7.2.5. Cysteine residues are highlighted in yellow. Positively charged amino acids, negatively charged amino acids, and hydrophobic amino acids in CDR3 are shown in red, green, and blue, respectively. ( c ) Sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) of the selected clones under non-reducing condition. M: Protein Marker.
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The feature of selected VNARs ( a ) The characterization of selected clone from each pool. n.d. = not detected. ( b ) VNAR amino acid sequence of selected clone. Complementarity determining region 1 (CDR1), Hyper variable region 2 (HV2), HV4 and CDR3 are expressed under the sequences. The sequences were expressed by using BioEdit version 7.2.5. Cysteine residues are highlighted in yellow. Positively charged amino acids, negatively charged amino acids, and hydrophobic amino acids in CDR3 are shown in red, green, and blue, respectively. ( c ) Sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) of the selected clones under non-reducing condition. M: Protein Marker.
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The feature of selected VNARs ( a ) The characterization of selected clone from each pool. n.d. = not detected. ( b ) VNAR amino acid sequence of selected clone. Complementarity determining region 1 (CDR1), Hyper variable region 2 (HV2), HV4 and CDR3 are expressed under the sequences. The sequences were expressed by using BioEdit version 7.2.5. Cysteine residues are highlighted in yellow. Positively charged amino acids, negatively charged amino acids, and hydrophobic amino acids in CDR3 are shown in red, green, and blue, respectively. ( c ) Sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) of the selected clones under non-reducing condition. M: Protein Marker.
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The feature of selected VNARs ( a ) The characterization of selected clone from each pool. n.d. = not detected. ( b ) VNAR amino acid sequence of selected clone. Complementarity determining region 1 (CDR1), Hyper variable region 2 (HV2), HV4 and CDR3 are expressed under the sequences. The sequences were expressed by using BioEdit version 7.2.5. Cysteine residues are highlighted in yellow. Positively charged amino acids, negatively charged amino acids, and hydrophobic amino acids in CDR3 are shown in red, green, and blue, respectively. ( c ) Sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) of the selected clones under non-reducing condition. M: Protein Marker.

Journal: Marine Drugs

Article Title: Novel Approach for Obtaining Variable Domain of New Antigen Receptor with Different Physicochemical Properties from Japanese Topeshark ( Hemitriakis japanica )

doi: 10.3390/md21110550

Figure Lengend Snippet: The feature of selected VNARs ( a ) The characterization of selected clone from each pool. n.d. = not detected. ( b ) VNAR amino acid sequence of selected clone. Complementarity determining region 1 (CDR1), Hyper variable region 2 (HV2), HV4 and CDR3 are expressed under the sequences. The sequences were expressed by using BioEdit version 7.2.5. Cysteine residues are highlighted in yellow. Positively charged amino acids, negatively charged amino acids, and hydrophobic amino acids in CDR3 are shown in red, green, and blue, respectively. ( c ) Sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) of the selected clones under non-reducing condition. M: Protein Marker.

Article Snippet: CDR3 sequence comparison figures were created using the alignment function (Clustal W [ ]) in BioEdit version 7.2.5 (Bioedit, Manchester, UK).

Techniques: Sequencing, Polyacrylamide Gel Electrophoresis, SDS Page, Clone Assay, Marker